I use a scan snap 1300 at home. I scan all my stuff to sky drive. It comes with really good software called something like Scan Snap Organizer (at work, can't verify).
I set up this software to save to one of my sky drive folders instead of the default 'my docs' on the hard drive. Actually, you can just make your 'my docs' a SkyDrive folder anyway but different topic.
Anyway, the organizer software automatically pulls in scans and lets you easily rename, move around within its 'file cabinet' structure, make scans searchable via ocr (I leave that on auto), delete, separate, or re-order scanned pages, etc.
My favorite part of this software is that it's file cabinet interface is just a front end for the real folder structure. So if you move away from scansnap software someday then you'll still have your scans as searchable pdfs that mirror the scansnap file cabinet structure you made.
It's so nice having all my scans backed up via SkyDrive!
Here's a tip that I just started doing: scanning docs makes me dependent on keyword searches for finding stuff. The thing that makes a search non-universal is your real file cabinet. There are just some things that aren't worth scanning for one reason or another. But how do you remember what you physically filed and, if so, where is it? To solve that, I made a 'what the #%& is in the file cabinet' index file. I use OneNote but excel or whatever works. It's sole purpose is to make what is physically filed show up on your computer search. Put that index file right in the root of your scansnap folder so you can narrow your search to that part of your computer when trying to retrieve something.