You probably just need to use the battery a bit more, to "wake up" those Li-ions and electrode matrices after being stored for a long time - Li-ion batteries are best stored with a charge of around 50%, but we're not sure just how much charge it had when it was kept for that long in the store. So, give it a few more weeks of normal use. However, try to follow the general tip in the next paragraph.
Here's a general tip on how to make your battery last longer. Keep the difference between charge and discharge less than 40-50% at a time, e.g. if you intend to discharge your phone from 100% to 10%*, once you get to 50% charge it back up to 60% and then continue to 10%. Better would be 100-70-80-50-60-30-40-10... basically, the lower the difference, the less chemical stresses the battery will be subjected to and the longer it will last (service life, not battery life). The same is true for charging. Best practices involve keeping the charge between 50-80% - although that would increase the battery service life several times, it could become impractical, especially that would imply having to charge the phone more often which can become really obstructive.
*- Doing this sometimes forces the battery circuitry to re-calibrate itself, hence making the charge estimates more accurate. It is, however, not really needed in my opinion. Battery charge indicators are mere estimates within 1-5% of the actual power content, as long as the battery does not report 50% for an actual power content of 10%. Calibrating the battery (by that method) more often than needed actually does more harm to the battery than normal use will.