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What I have to do is go to settings hamburger button in the OneDrive app and log out of my account then log back in and the files all come back. Then later in the day the folders start to disappear again.
And then after you log out of OneDrive and back in, you have to go to Camera Upload app and turn that back on too or your photos and videos will stop uploading automatically.
Yes it is. :-(This worked for me as well. What a pain in the ***.