There are a number of ways, this isn't the exact way I did it but a number of the steps are the same.
https://msdn.microsoft.com/en-us/win...-windows-phone
I have already posted on the dev hub for win10m to suggest they include something similar to desktop with scannow /sfc which will replace missing system files etc nicely.
The apps I am experiencing issues with are ones that are not well maintained and probably just patched to work on win10m as there isn't a huge development base for it. Spotify, Nextgen Reader, Symantec VIP Access etc. It is very interesting that Extras & Info doesn't load (with the same missing file) which suggests it hasn't been upgraded. Naughty Microsoft.
I am really trying to avoid hard resetting my phone, and for an OS this is something that should be handled without having to completely wipe the phone.