I believe the issue is how the two kind of charger work.
For stock wired one, it will continue to charge the phone until full and continue to 'charge mode for a while , then stop. And will back to charging mode once the battery goes down to A point (around 98%).
But for wireless charger, it basically first slow down right when battery reach X point (around 95%), and will stop very shortly after reach 100%. And won't back to charging mode until lower than the X point.
And X<A, because wireless charger and traditional wired charger have different mechanism to dedicate battery level, so they use different way to protect the battery from being over charged. And for wired charger, for most of recent smartphone with micro usb, the phone can tell the charger to stop. While the wireless , is all just two pins/three pins, so it slow down when the voltage of the two pins from the phone reach certain levels.
And therefore, it is more possible that when you take the phone off wireless charger, when the phone finished its charging mode, but not lower enough to start charging mode again.
Of course , that is just my theory depends on my reading and understanding on inductive charging.