In my previous experiences with those types of screen protectors some of those bubbles do come out, but If they are due to dust or too big then they probably won't.
I realize that it may be too late for this, but I got a screen protector from RealLook and it is awesome. Skinomi has a DryTech (or something like that) protector that may be almost identical, but I haven't tried it.
It may be a little pricey, but I think it's worth it. It's the best screen protector I've ever bought, and it comes with two of them, as well as 4 camera lense protectors.
Amazon.com: REALOOK AT&T Nokia Lumia 900 Screen Protector, Crystal Clear 2-PK: Computers & Accessories